leighsilverstein

About leighsilverstein

A freelance website developer and soon to be mom to a beautiful daughter. Wife to a wonderful and loving husband, Cord. Mom to a bouncing puppy named Chance.

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Project Title Project Number Contact PI / Project Leader Organization Name Publications TDCC Status
Development of GenomeBuild as a Universal Method to Synthesize Genomes HG012745 WARREN, CHRISTOPHER L (contact); OZERS, MARY SZATKOWSKI PROTEOVISTA, LLC View publication Active
The Assemblatron HG012743 BOEKE, JEF D NEW YORK UNIVERSITY SCHOOL OF MEDICINE View publication Active
Development of Next-Generation Mass Spectrometry-based de novo RNA Sequencing for all Modifications HG012853 ZHANG, SHENGLONG NEW YORK INST OF TECHNOLOGY View publication Active
Advancing an Innovative NGS Approach to Discover and Investigate Histone Tail Proteolysis HG012833 RICE, JUDD C UNIVERSITY OF SOUTHERN CALIFORNIA View publication Active
Sequencing the Mono-Methylated Derivatives of Cytidine HG012850 ERVIN, ERIC ELECTRONIC BIOSCIENCES, INC. View publication Active
Extensive multiplexing of protein nucleic-acid interactions to comprehensively study gene expression regulation from chromatin to mRNA degradation HG012216 JOVANOVIC, MARKO (contact); GUTTMAN, MITCHELL COLUMBIA UNIV NEW YORK MORNINGSIDE View publication Active
Mapping the dynamics of mouse neurogenesis in autism models using high-resolution genomic barcoding technologies HG012357 KALHOR, REZA JOHNS HOPKINS UNIVERSITY View publication Active
METHYL-SENTRY: Proposed feasibility study of a nanopore diagnostic tool with rapid automated measurement of cell free DNA methylation state for clinical cancer evaluation HG012724 DIPAOLO, BRIAN GOEPPERT, LLC View publication Active
DNA 3.0: Development of a novel, efficient and cost-effective enzymatic process for synthesis of DNA oligonucleotides HG010995 ZIELER, HELGE PRIMORDIAL GENETICS, INC View publication Active
Single molecule DNA/RNA sequencing technology based on a parallel Raman scattering readout in a coupled nanochannel/nanopore system HG011608 BRUECK, STEVEN ARMONICA TECHNOLOGIES, INC. View publication Active
Targets and functions of the mammalian snoRNAome HG012780 PAN, TAO (contact); HE, CHUAN UNIVERSITY OF CHICAGO View publication Active
CRISPR-based genome tagging of iPS Cells for stain-free multicolor live cell analysis HG012241 PEREZ-LEAL, OSCAR TEMPLE UNIV OF THE COMMONWEALTH View publication Active
Single-cell and single-molecule profiling of protein-DNA interactions by MACHA HG012423 POTT, SEBASTIAN (contact); IKEGAMI, KOHTA UNIVERSITY OF CHICAGO View publication Active
Single molecule oligopeptide fingerprinting based on templated self-assembly of oligonucleotide structures HG012543 HESS, HENRY COLUMBIA UNIV NEW YORK MORNINGSIDE View publication Active
Designed nanopores for single-molecule protein sequencing HG012554 MAGLIA, GIOVANNI GRONINGEN UNIVERSITY View publication Active
Structural profiling of native proteins using fluorosequencing, a single molecule protein sequencing technology HG012561 SWAMINATHAN, JAGANNATH ERISYON INC View publication Active
Ultrasensitive multiomic platform using epitope-targeted DNA methylation mapping HG011875 KEOGH, MICHAEL-CHRISTOPHER (contact); VENTERS, BRYAN J EPICYPHER, INC. View publication Active
Semi-permeable capsules for high-throughput single cell multi-omics HG012771 KLEIN, ALLON MOSHE HARVARD MEDICAL SCHOOL View publication Active
Telomere-to-telomere assemblies of human genomes HG011274 MIGA, KAREN HAYDEN UNIVERSITY OF CALIFORNIA SANTA CRUZ View publication Active
Development of an Accurate, Long and Fast DNA Synthesis Device HG012278 PREDKI, PAUL F IRIDIA, INC. View publication Active
Long-read single-molecule protein sequencing on an array of unfoldase-coupled nanopores HG012545 NIVALA, JEFFREY MATTHEW UNIVERSITY OF WASHINGTON View publication Active
Single-molecule protein sequencing by iterative isolation and identification of N-terminal amino acids HG012563 ESTANDIAN, DANIEL MASAO GLYPHIC BIOTECHNOLOGIES, INC. View publication Active
Single Molecule Protein Sequencing using Nanopores and Deep-UV Raman Spectroscopy HG012549 FREEDMAN, KEVIN UNIVERSITY OF CALIFORNIA RIVERSIDE View publication Active
Towards Single-Molecule Protein Sequencing with Nanopores HG012544 GUNDLACH, JENS (contact); DEKKER, CEES UNIVERSITY OF WASHINGTON View publication Active
Enzymeless, controlled electrostatic ratcheting in solid-state nanopores HG012413 SHEPARD, KENNETH L (contact); DRNDIC, MARIJA COLUMBIA UNIV NEW YORK MORNINGSIDE View publication Active
Direct Electrical Measurement of Proteasome Activity for Single-Molecule Protein Sequencing HG012538 LINDSAY, STUART ARIZONA STATE UNIVERSITY-TEMPE CAMPUS View publication Active
Advanced Parallel Readers for DNA Sequencing Through a 2D Nanopore HG012395 DRNDIC, MARIJA UNIVERSITY OF PENNSYLVANIA View publication Active
Novel Chemical Probes for Sequencing Multiple DNA Modifications at Single-Nucleotide Resolution HG012412 ZHAO, LINLIN UNIVERSITY OF CALIFORNIA RIVERSIDE View publication Active
Dual Reader Protein Sequencing HG012559 ERVIN, ERIC ELECTRONIC BIOSCIENCES, INC. View publication Active
Two readers for RNA HG012364 SCHIBEL, ANNA ELECTRONIC BIOSCIENCES, INC. View publication Active
Nanoscale Tools for Inosine Sequencing HG012409 ERVIN, ERIC ELECTRONIC BIOSCIENCES, INC. View publication Active
Methods for Mapping Genetic Regulatory Elements in Single Cells and Single Molecules HG012383 STREETS, AARON UNIVERSITY OF CALIFORNIA BERKELEY View publication Active
Multiplexed In Vivo DNA Assembly HG011676 LEVY, SASHA F (contact); SHERLOCK, GAVIN J STANFORD UNIVERSITY View publication Active
High-throughput analysis of the effects of gene promoters and chromosomal environments on single-cell gene expression HG012304 COHEN, BARAK A WASHINGTON UNIVERSITY View publication Active
A single-strand ligation approach for concomitant DNA and RNA next-generation sequencing from low abundance inputs HG011877 RAO, VARSHA CLARET BIOSCIENCE, LLC View publication Active
A scalable kit-based assay for multi-omic analyses of transcriptional protein binding and chromatin interactions from ultra-low input frozen and FFPE samples at single-cell resolution HG011897 SCHMITT, ANTHONY ARIMA GENOMICS, INC. View publication Active
Tagmentation-based Indexing for Methylation Sequencing as a novel method of high-throughput methylation clock measurement HG011850 SINCLAIR, DAVID A HARVARD MEDICAL SCHOOL View publication Active
Bacteriophage Mu as Tool to Study Genome Organization in Bacteria and Eukaryotes HG011838 HARSHEY, RASIKA M (contact); FREDDOLINO, PETER L UNIVERSITY OF TEXAS, AUSTIN View publication Active
High-throughput detection of transcriptomic and epitranscriptomic variation and kinetics using MarathonRT HG011868 PYLE, ANNA MARIE (contact); GRAVELEY, BRENTON R YALE UNIVERSITY View publication Active
STAMP technology to enable single-cell and isoform-sensitive detection of RBP sites HG011864 YEO, EUGENE WEI-MING UNIVERSITY OF CALIFORNIA, SAN DIEGO View publication Active
High-throughput development and characterization of compact tools for transcriptional and chromatin perturbations HG011866 BINTU, LACRAMIOARA (contact); BASSIK, MICHAEL C STANFORD UNIVERSITY View publication Active
Ion Fountain Nanopore Readers for High-Resolution DNA and RNA Sequencing HG011689 WANUNU, MENI NORTHEASTERN UNIVERSITY View publication Active
RNA targeting tools with novel specific RNA-guided RNA-targeting CRISPR effectors HG011857 GOOTENBERG, JONATHAN SAMUEL (contact); ABUDAYYEH, OMAR O MASSACHUSETTS INSTITUTE OF TECHNOLOGY View publication Active
Nanopore based profiling of epigenetic state HG009190 TIMP, WINSTON GEORGE JOHNS HOPKINS UNIVERSITY View publication Active
Protein tagging at scale to enable functional genomic studies HG011855 CHAVEZ, ALEJANDRO COLUMBIA UNIVERSITY HEALTH SCIENCES View publication Active
A transposase system for integrative ChIP-exo and ATAC-seq analysis at single-cell resolution HG010211 ZEITLINGER, JULIA STOWERS INSTITUTE FOR MEDICAL RESEARCH View publication Active
Massively Parallel Single Cell Detection of Rare Variants with Split-Pool Combinatorial Indexing HG011229 KENNEDY, SCOTT ROBERT (contact); SEELIG, GEORG UNIVERSITY OF WASHINGTON View publication Active
Versatile, exponentially scalable methods for single cell molecular profiling HG010632 SHENDURE, JAY ASHOK (contact); TRAPNELL, BRUCE COLSTON UNIVERSITY OF WASHINGTON View publication Active
Development of methods for multi-omic analysis of DNA methylation and chromatin architecture in single cells HG010634 ECKER, JOSEPH R (contact); DIXON, JESSE R SALK INSTITUTE FOR BIOLOGICAL STUDIES View publication Active
TempO-Seq Profiling of RNA Epitranscriptomic Modifications HG009763 SELIGMANN, BRUCE E. BIOSPYDER TECHNOLOGIES, INC. View publication Active
DNA barcoding via multi-scan and step control in dual-pore tug-of-war HG011236 REISNER, WALTER (contact); DUNBAR, WILLIAM BRUCE; SLADEK, ROBERT MCGILL UNIVERSITY View publication Active
Non-destructive epigenetic sequencing with DNA deaminase enzymes HG010646 KOHLI, RAHUL MANU (contact); WU, HAO UNIVERSITY OF PENNSYLVANIA View publication Active
A single cell spatial genomics platform for multi-modal characterization of tissue organization HG010647 CHEN, FEI (contact); MACOSKO, EVAN Z BROAD INSTITUTE, INC. View publication Active
Integrative single-cell spatial genomic, transcriptomic, and epigenetic imaging in mammalian tissue HG011245 WANG, SIYUAN YALE UNIVERSITY View publication Active
Mapping gene-by-environment interactions using multiplexed single cell RNA-sequencing HG011239 YE, CHUN JIMMIE UNIVERSITY OF CALIFORNIA, SAN FRANCISCO View publication Active
Automated CRISPR Enabled DNA Synthesis (CEDS) HG011675 LYNCH, MICHAEL DAVID DUKE UNIVERSITY View publication Active
Synthesis and non-chromatographic purification of long RNA oligonucleotides containing naturally occurring modification HG012257 ROYZEN, MAKSIM STATE UNIVERSITY OF NEW YORK AT ALBANY View publication Active
GenSyn: A Cycle for Serial Assembly of Very Large DNA Molecules HG012281 SCHWARTZ, DAVID C UNIVERSITY OF WISCONSIN-MADISON View publication Active
Enzymatic Synthesis of RNA HG011669 BENNER, STEVEN A (contact); POMERANTZ, RICHARD T FOUNDATION FOR APPLIED MOLECULAR EVOLUTION View publication Active
A low-cost benchtop oligonucleotide synthesizer using inkjet enzymatic DNA synthesis HG011736 HORGAN, ADRIAN DNA SCRIPT View publication Active
Conductance Fluctuations: A New Approach to Sequencing? HG010522 LINDSAY, STUART ARIZONA STATE UNIVERSITY-TEMPE CAMPUS View publication Active
High Accuracy Nanopore Sequencing HG005115 GUNDLACH, JENS UNIVERSITY OF WASHINGTON View publication Active
Direct Determination of Multiple Specific Forms of DNA Chemical Modifications in Human Genome HG011095 FANG, GANG ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI View publication Active
Computational Design Engine for Accurate and Efficient Sequencing of DNA and RNA HG002776 MUTHUKUMAR, MURUGAPPAN UNIVERSITY OF MASSACHUSETTS AMHERST View publication Active
Direct nanopore detection of modified RNA to probe structure and dynamics HG010538 TIMP, WINSTON GEORGE JOHNS HOPKINS UNIVERSITY View publication Active
Exploring 3Dpol for RNA sequencing in real time HG011120 HOU, YA-MING THOMAS JEFFERSON UNIVERSITY View publication Active
Single-cell direct RNA sequencing using electrical zero-mode waveguides and engineered reverse transcriptases HG011087 WANUNU, MENI NORTHEASTERN UNIVERSITY View publication Active
Chemically Tuned Silicon Nitride Nanopores for Nucleic Acid Sequencing HG011096 DWYER, JASON RODGER UNIVERSITY OF RHODE ISLAND View publication Active
Sequencing by Direct Electrical Measurements of Polymerase Fluctuations HG011079 LINDSAY, STUART ARIZONA STATE UNIVERSITY-TEMPE CAMPUS View publication Active
Improving biological nanopores for precision nucleic acid sequencing using a computational microscope HG011741 AKSIMENTIEV, ALEKSEI (contact); CHEN, MIN UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN View publication Active
A Unified Nanopore Platform for Direct Sequencing of Individual Full Length RNA Strands Bearing Modified Nucleotides HG010053 AKESON, MARK A UNIVERSITY OF CALIFORNIA SANTA CRUZ View publication Active
Single-Molecule Electronic Nucleic Acid Sequencing-by-Synthesis Using Novel Tagged Nucleotides and Nanopore Constructs HG010514 JU, JINGYUE (contact); CHURCH, GEORGE M; KALACHIKOV, SERGEY COLUMBIA UNIV NEW YORK MORNINGSIDE View publication Active
Genome Technologies Coordinating Center HG011735 ADAMS, MARK D JACKSON LABORATORY View publication Active
Development of efficient quantitative chromatin profiling in kit and high-throughput formats HG010640 VENTERS, BRYAN J (contact); KEOGH, MICHAEL-CHRISTOPHER EPICYPHER, INC. View publication Complete
Arrayed single-cell readout of pooled genetic perturbation libraries HG009283 BLAINEY, PAUL CLARK BROAD INSTITUTE, INC. View publication Complete
Next-generation Functional Genetic Screening of Un-screenable Traits HG009285 MALI, PRASHANT (contact); TAMAYO, PABLO ; ZHANG, KUN UNIVERSITY OF CALIFORNIA, SAN DIEGO View publication Complete
Programmable RNA-targeting tools HG009761 ZHANG, FENG BROAD INSTITUTE, INC. View publication Complete
AVATAR: highly parallel analysis of variation in transcription factors and their DNA binding sites HG010200 BULYK, MARTHA L BRIGHAM AND WOMEN’S HOSPITAL View publication Complete
Circular RNA as a platform for genome-wide microRNA sponge libraries HG011214 PICKERING, BRIAN FREDERICK CHIMERNA THERAPEUTICS INC. View publication Complete
Orthocoding for Spatial Sequencing HG011231 SALZMAN, JULIA; FORDYCE, POLLY MORRELL; ROHATGI, RAJAT STANFORD UNIVERSITY View publication Complete
Drop-BS: high-throughput single-cell bisulfite sequencing on a microfluidic droplet platform HG010195 LU, CHANG VIRGINIA POLYTECHNIC INST AND ST UNIV View publication Complete
Epi-seq: Multiplexed ChIP-seq for personalized medicine and drug discovery HG010237 JELINEK, MARY ANNE ACTIVE MOTIF, INC. View publication Complete
On-site, high-fidelity target sequencing and absolute quantitation for HIV-1 surveillance HG010318 KIM, SANGGU OHIO STATE UNIVERSITY View publication Complete
Development of a Fully Enzymatic Oligonucleotide Synthesis Cycle by Engineered Template Independent Polymerases and a Novel Phosphate dNTP Blocking Group HG011679 SAMMOND, DEANNE WALLANDER (contact); PAUL, NATASHA MOLECULAR ASSEMBLIES, INC. View publication Complete
Single-chain MspA for nanopore sequencing of DNA HG010543 NIEDERWEIS, MICHAEL UNIVERSITY OF ALABAMA AT BIRMINGHAM View publication Complete
Novel sequencing by synthesis platform to greatly reduce the cost of nucleic acid sequencing HG010558 PRATT, MARK ROBIN ULTIMA GENOMICS, INC. View publication Complete
RNA Sequencing Via Single Reverse Transcript Assessments HG011070 GERMAN, SEAN ELECTRONIC BIOSCIENCES, INC. View publication Complete
Nanopore Based Direct BAT-25 Microsatellite Sequencing HG010435 SCHIBEL, ANNA ELECTRONIC BIOSCIENCES, INC. View publication Complete
Improving Throughput of Long Reads with High Consensus Base Accuracy to Resolve Repetitive DNAs HG010548 MIGA, KAREN HAYDEN UNIVERSITY OF CALIFORNIA SANTA CRUZ View publication Complete
LC/MS-Based Direct RNA Sequencing with Concomitant Capability to Sequence Multiple Base Modifications at Single-base Resolution HG011099 ZHANG, SHENGLONG NEW YORK INST OF TECHNOLOGY View publication Complete
DNA Sequencing with novel 2D FET-nanopore devices HG010536 DRNDIC, MARIJA UNIVERSITY OF PENNSYLVANIA View publication Complete
Exonuclease Epigenetic Sequencing HG010049 ERVIN, ERIC ELECTRONIC BIOSCIENCES, INC. View publication Complete
High-accuracy, long-range sequencing for HIV-1 genotyping HG010108 KIM, SANGGU OHIO STATE UNIVERSITY View publication Complete
Novel sequencing by synthesis chemistry to further reduce the cost of nucleic acid sequencing HG011060 MAZUR, DANIEL JOSEPH ULTIMA GENOMICS, INC. View publication Complete

in conjunction with

The Technology Development Coordinating Center is supported by NHGRI Project U24HG011735 and The Jackson Laboratory.

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