Single-Cell Methods Archives

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Project Title	Project Number	Contact PI / Project Leader	Organization Name	Publications	TDCC Status
Light-Seq: Spatially targeted profiling of transcriptomic states in cells and tissue	HG012926	YIN, PENG	HARVARD UNIVERSITY	View publication	Active
Scalable, quantitative, single-cell CRISPR screens	HG012230	NORMAN, THOMAS	SLOAN-KETTERING INST CAN RESEARCH	View publication	Active
Mapping the dynamics of mouse neurogenesis in autism models using high-resolution genomic barcoding technologies	HG012357	KALHOR, REZA	JOHNS HOPKINS UNIVERSITY	View publication	Active
Single-cell and single-molecule profiling of protein-DNA interactions by MACHA	HG012423	POTT, SEBASTIAN (contact); IKEGAMI, KOHTA	UNIVERSITY OF CHICAGO	View publication	Active
Methods for Mapping Genetic Regulatory Elements in Single Cells and Single Molecules	HG012383	STREETS, AARON	UNIVERSITY OF CALIFORNIA BERKELEY	View publication	Active
High-throughput analysis of the effects of gene promoters and chromosomal environments on single-cell gene expression	HG012304	COHEN, BARAK A	WASHINGTON UNIVERSITY	View publication	Active
Tagmentation-based Indexing for Methylation Sequencing as a novel method of high-throughput methylation clock measurement	HG011850	SINCLAIR, DAVID A	HARVARD MEDICAL SCHOOL	View publication	Active
STAMP technology to enable single-cell and isoform-sensitive detection of RBP sites	HG011864	YEO, EUGENE WEI-MING	UNIVERSITY OF CALIFORNIA, SAN DIEGO	View publication	Active
Mapping gene-by-environment interactions using multiplexed single cell RNA-sequencing	HG011239	YE, CHUN JIMMIE	UNIVERSITY OF CALIFORNIA, SAN FRANCISCO	View publication	Active
Arrayed single-cell readout of pooled genetic perturbation libraries	HG009283	BLAINEY, PAUL CLARK	BROAD INSTITUTE, INC.	View publication	Complete
A transposase system for integrative ChIP-exo and ATAC-seq analysis at single-cell resolution	HG010211	ZEITLINGER, JULIA	STOWERS INSTITUTE FOR MEDICAL RESEARCH	View publication	Complete
Massively Parallel Single Cell Detection of Rare Variants with Split-Pool Combinatorial Indexing	HG011229	KENNEDY, SCOTT ROBERT (contact); SEELIG, GEORG	UNIVERSITY OF WASHINGTON	View publication	Complete
Orthocoding for Spatial Sequencing	HG011231	SALZMAN, JULIA; FORDYCE, POLLY MORRELL; ROHATGI, RAJAT	STANFORD UNIVERSITY	View publication	Complete
Drop-BS: high-throughput single-cell bisulfite sequencing on a microfluidic droplet platform	HG010195	LU, CHANG	VIRGINIA POLYTECHNIC INST AND ST UNIV	View publication	Complete