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Sequencing Technology Development
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Project Title
Project Number
Contact PI / Project Leader
Organization Name
Publications
TDCC Status
Synthetic mRNA Control Set for Nanopore-Based Pseudouridine Modification Profiling in Human Transcriptomes
HG012856
ROUHANIFARD, SARA
NORTHEASTERN UNIVERSITY
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Active
Development of Next-Generation Mass Spectrometry-based de novo RNA Sequencing for all Modifications
HG012853
ZHANG, SHENGLONG
NEW YORK INST OF TECHNOLOGY
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Active
Sequencing the Mono-Methylated Derivatives of Cytidine
HG012850
ERVIN, ERIC
ELECTRONIC BIOSCIENCES, INC.
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Active
METHYL-SENTRY: Proposed feasibility study of a nanopore diagnostic tool with rapid automated measurement of cell free DNA methylation state for clinical cancer evaluation
HG012724
DIPAOLO, BRIAN
GOEPPERT, LLC
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Active
Single molecule DNA/RNA sequencing technology based on a parallel Raman scattering readout in a coupled nanochannel/nanopore system
HG011608
BRUECK, STEVEN
ARMONICA TECHNOLOGIES, INC.
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Active
Telomere-to-telomere assemblies of human genomes
HG011274
MIGA, KAREN HAYDEN
UNIVERSITY OF CALIFORNIA SANTA CRUZ
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Active
Enzymeless, controlled electrostatic ratcheting in solid-state nanopores
HG012413
SHEPARD, KENNETH L (contact); DRNDIC, MARIJA
COLUMBIA UNIV NEW YORK MORNINGSIDE
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Active
Advanced Parallel Readers for DNA Sequencing Through a 2D Nanopore
HG012395
DRNDIC, MARIJA
UNIVERSITY OF PENNSYLVANIA
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Active
Novel Chemical Probes for Sequencing Multiple DNA Modifications at Single-Nucleotide Resolution
HG012412
ZHAO, LINLIN
UNIVERSITY OF CALIFORNIA RIVERSIDE
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Active
Two readers for RNA
HG012364
SCHIBEL, ANNA
ELECTRONIC BIOSCIENCES, INC.
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Active
Nanoscale Tools for Inosine Sequencing
HG012409
ERVIN, ERIC
ELECTRONIC BIOSCIENCES, INC.
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Active
Ion Fountain Nanopore Readers for High-Resolution DNA and RNA Sequencing
HG011689
WANUNU, MENI
NORTHEASTERN UNIVERSITY
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Active
Conductance Fluctuations: A New Approach to Sequencing?
HG010522
LINDSAY, STUART
ARIZONA STATE UNIVERSITY-TEMPE CAMPUS
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Active
High Accuracy Nanopore Sequencing
HG005115
GUNDLACH, JENS
UNIVERSITY OF WASHINGTON
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Active
Direct Determination of Multiple Specific Forms of DNA Chemical Modifications in Human Genome
HG011095
FANG, GANG
ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI
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Active
Direct nanopore detection of modified RNA to probe structure and dynamics
HG010538
TIMP, WINSTON GEORGE
JOHNS HOPKINS UNIVERSITY
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Active
Exploring 3Dpol for RNA sequencing in real time
HG011120
HOU, YA-MING
THOMAS JEFFERSON UNIVERSITY
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Active
Single-cell direct RNA sequencing using electrical zero-mode waveguides and engineered reverse transcriptases
HG011087
WANUNU, MENI
NORTHEASTERN UNIVERSITY
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Active
Sequencing by Direct Electrical Measurements of Polymerase Fluctuations
HG011079
LINDSAY, STUART
ARIZONA STATE UNIVERSITY-TEMPE CAMPUS
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Active
Improving biological nanopores for precision nucleic acid sequencing using a computational microscope
HG011741
AKSIMENTIEV, ALEKSEI (contact); CHEN, MIN
UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN
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Active
Single-Molecule Electronic Nucleic Acid Sequencing-by-Synthesis Using Novel Tagged Nucleotides and Nanopore Constructs
HG010514
JU, JINGYUE (contact); CHURCH, GEORGE M; KALACHIKOV, SERGEY
COLUMBIA UNIV NEW YORK MORNINGSIDE
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Active
DNA barcoding via multi-scan and step control in dual-pore tug-of-war
HG011236
REISNER, WALTER (contact); DUNBAR, WILLIAM BRUCE; SLADEK, ROBERT
MCGILL UNIVERSITY
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Complete
On-site, high-fidelity target sequencing and absolute quantitation for HIV-1 surveillance
HG010318
KIM, SANGGU
OHIO STATE UNIVERSITY
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Complete
Single-chain MspA for nanopore sequencing of DNA
HG010543
NIEDERWEIS, MICHAEL
UNIVERSITY OF ALABAMA AT BIRMINGHAM
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Complete
Novel sequencing by synthesis platform to greatly reduce the cost of nucleic acid sequencing
HG010558
PRATT, MARK ROBIN
ULTIMA GENOMICS, INC.
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Complete
RNA Sequencing Via Single Reverse Transcript Assessments
HG011070
GERMAN, SEAN
ELECTRONIC BIOSCIENCES, INC.
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Complete
Nanopore Based Direct BAT-25 Microsatellite Sequencing
HG010435
SCHIBEL, ANNA
ELECTRONIC BIOSCIENCES, INC.
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Complete
Improving Throughput of Long Reads with High Consensus Base Accuracy to Resolve Repetitive DNAs
HG010548
MIGA, KAREN HAYDEN
UNIVERSITY OF CALIFORNIA SANTA CRUZ
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Complete
LC/MS-Based Direct RNA Sequencing with Concomitant Capability to Sequence Multiple Base Modifications at Single-base Resolution
HG011099
ZHANG, SHENGLONG
NEW YORK INST OF TECHNOLOGY
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Complete
DNA Sequencing with novel 2D FET-nanopore devices
HG010536
DRNDIC, MARIJA
UNIVERSITY OF PENNSYLVANIA
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Complete
Exonuclease Epigenetic Sequencing
HG010049
ERVIN, ERIC
ELECTRONIC BIOSCIENCES, INC.
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Complete
High-accuracy, long-range sequencing for HIV-1 genotyping
HG010108
KIM, SANGGU
OHIO STATE UNIVERSITY
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Complete
Computational Design Engine for Accurate and Efficient Sequencing of DNA and RNA
HG002776
MUTHUKUMAR, MURUGAPPAN
UNIVERSITY OF MASSACHUSETTS AMHERST
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Complete
Chemically Tuned Silicon Nitride Nanopores for Nucleic Acid Sequencing
HG011096
DWYER, JASON RODGER
UNIVERSITY OF RHODE ISLAND
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Complete
Novel sequencing by synthesis chemistry to further reduce the cost of nucleic acid sequencing
HG011060
MAZUR, DANIEL JOSEPH
ULTIMA GENOMICS, INC.
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Complete
A Unified Nanopore Platform for Direct Sequencing of Individual Full Length RNA Strands Bearing Modified Nucleotides
HG010053
AKESON, MARK A
UNIVERSITY OF CALIFORNIA SANTA CRUZ
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Complete
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