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Found 62 Results
Project Title Project Number Contact PI / Project Leader Organization Name Pulications
High-throughput analysis of the effects of gene promoters and chromosomal environments on single-cell gene expression HG012304-01 COHEN, BARAK A WASHINGTON UNIVERSITY View publication
A single-strand ligation approach for concomitant DNA and RNA next-generation sequencing from low abundance inputs HG011877 RAO, VARSHA CLARET BIOSCIENCE, LLC View publication
Development of efficient quantitative chromatin profiling in kit and high-throughput formats HG010640 VENTERS, BRYAN J; KEOGH, MICHAEL-CHRISTOPHER EPICYPHER, INC. View publication
A scalable kit-based assay for multi-omic analyses of transcriptional protein binding and chromatin interactions from ultra-low input frozen and FFPE samples at single-cell resolution HG011897 SCHMITT, ANTHONY ARIMA GENOMICS, INC. View publication
Tagmentation-based Indexing for Methylation Sequencing as a novel method of high-throughput methylation clock measurement HG011850 SINCLAIR, DAVID A HARVARD MEDICAL SCHOOL View publication
Bacteriophage Mu as Tool to Study Genome Organization in Bacteria and Eukaryotes HG011838 HARSHEY, RASIKA M;FREDDOLINO, PETER L UNIVERSITY OF TEXAS, AUSTIN View publication
High-throughput detection of transcriptomic and epitranscriptomic variation and kinetics using MarathonRT HG011868 PYLE, ANNA MARIE; GRAVELEY, BRENTON R YALE UNIVERSITY View publication
STAMP technology to enable single-cell and isoform-sensitive detection of RBP sites HG011864 YEO, EUGENE WEI-MING UNIVERSITY OF CALIFORNIA, SAN DIEGO View publication
High-throughput development and characterization of compact tools for transcriptional and chromatin perturbations HG011866 BINTU, LACRAMIOARA; BASSIK, MICHAEL C STANFORD UNIVERSITY View publication
Ion Fountain Nanopore Readers for High-Resolution DNA and RNA Sequencing HG011689 WANUNU, MENI NORTHEASTERN UNIVERSITY View publication
RNA targeting tools with novel specific RNA-guided RNA-targeting CRISPR effectors HG011857 GOOTENBERG, JONATHAN SAMUEL; ABUDAYYEH, OMAR O MASSACHUSETTS INSTITUTE OF TECHNOLOGY View publication
Nanopore based profiling of epigenetic state HG009190 TIMP, WINSTON GEORGE JOHNS HOPKINS UNIVERSITY View publication
Protein tagging at scale to enable functional genomic studies HG011855 CHAVEZ, ALEJANDRO COLUMBIA UNIVERSITY HEALTH SCIENCES View publication
Development of efficient quantitative chromatin profiling in kit and high-throughput formats HG010640 VENTERS, BRYAN J; KEOGH, MICHAEL-CHRISTOPHER PHER, INC. View publication
Arrayed single-cell readout of pooled genetic perturbation libraries HG009283 BLAINEY, PAUL CLARK BROAD INSTITUTE, INC. View publication
Next-generation Functional Genetic Screening of Un-screenable Traits HG009285 MALI, PRASHANT; TAMAYO, PABLO ; ZHANG, KUN UNIVERSITY OF CALIFORNIA, SAN DIEGO View publication
Programmable RNA-targeting tools HG009761 ZHANG, FENG BROAD INSTITUTE, INC. View publication
A transposase system for integrative ChIP-exo and ATAC-seq analysis at single-cell resolution HG010211 ZEITLINGER, JULIA STOWERS INSTITUTE FOR MEDICAL RESEARCH View publication
AVATAR: highly parallel analysis of variation in transcription factors and their DNA binding sites HG010200 BULYK, MARTHA L BRIGHAM AND WOMEN’S HOSPITAL View publication
Massively Parallel Single Cell Detection of Rare Variants with Split-Pool Combinatorial Indexing HG011229 KENNEDY, SCOTT ROBERT; SEELIG, GEORG UNIVERSITY OF WASHINGTON View publication
Versatile, exponentially scalable methods for single cell molecular profiling HG010632 SHENDURE, JAY ASHOK; TRAPNELL, BRUCE COLSTON UNIVERSITY OF WASHINGTON View publication
Circular RNA as a platform for genome-wide microRNA sponge libraries HG011214 PICKERING, BRIAN FREDERICK CHIMERNA THERAPEUTICS INC. View publication
Orthocoding for Spatial Sequencing HG011231 SALZMAN, JULIA; FORDYCE, POLLY MORRELL; ROHATGI, RAJAT STANFORD UNIVERSITY View publication
Drop-BS: high-throughput single-cell bisulfite sequencing on a microfluidic droplet platform HG010195 LU, CHANG VIRGINIA POLYTECHNIC INST AND ST UNIV View publication
Development of methods for multi-omic analysis of DNA methylation and chromatin architecture in single cells HG010634 ECKER, JOSEPH R; DIXON, JESSE R SALK INSTITUTE FOR BIOLOGICAL STUDIES View publication
TempO-Seq Profiling of RNA Epitranscriptomic Modifications HG009763 SELIGMANN, BRUCE E. BIOSPYDER TECHNOLOGIES, INC. View publication
Epi-seq: Multiplexed ChIP-seq for personalized medicine and drug discovery HG010237 JELINEK, MARY ANNE ACTIVE MOTIF, INC. View publication
DNA barcoding via multi-scan and step control in dual-pore tug-of-war HG011236 REISNER, WALTER; DUNBAR, WILLIAM BRUCE; SLADEK, ROBERT MCGILL UNIVERSITY View publication
On-site, high-fidelity target sequencing and absolute quantitation for HIV-1 surveillance HG010318 KIM, SANGGU OHIO STATE UNIVERSITY View publication
Non-destructive epigenetic sequencing with DNA deaminase enzymes HG010646 KOHLI, RAHUL MANU; WU, HAO UNIVERSITY OF PENNSYLVANIA View publication
A single cell spatial genomics platform for multi-modal characterization of tissue organization HG010647 CHEN, FEI; MACOSKO, EVAN Z BROAD INSTITUTE, INC. View publication
Integrative single-cell spatial genomic, transcriptomic, and epigenetic imaging in mammalian tissue HG011245 WANG, SIYUAN YALE UNIVERSITY View publication
Mapping gene-by-environment interactions using multiplexed single cell RNA-sequencing HG011239 YE, CHUN JIMMIE UNIVERSITY OF CALIFORNIA, SAN FRANCISCO View publication
Automated CRISPR Enabled DNA Synthesis (CEDS) HG011675-01A1 LYNCH, MICHAEL DAVID DUKE UNIVERSITY View publication
Synthesis and non-chromatographic purification of long RNA oligonucleotides containing naturally occurring modification HG012257-01 ROYZEN, MAKSIM STATE UNIVERSITY OF NEW YORK AT ALBANY View publication
GenSyn: A Cycle for Serial Assembly of Very Large DNA Molecules HG012281-01 SCHWARTZ, DAVID C UNIVERSITY OF WISCONSIN-MADISON View publication
Development of a Fully Enzymatic Oligonucleotide Synthesis Cycle by Engineered Template Independent Polymerases and a Novel Phosphate dNTP Blocking Group HG011679 SAMMOND, DEANNE WALLANDER; PAUL, NATASHA MOLECULAR ASSEMBLIES, INC. View publication
Enzymatic Synthesis of RNA HG011669 BENNER, STEVEN A; POMERANTZ, RICHARD T FOUNDATION FOR APPLIED MOLECULAR EVOLUTN View publication
A low-cost benchtop oligonucleotide synthesizer using inkjet enzymatic DNA synthesis HG011736 HORGAN, ADRIAN DNA SCRIPT View publication
Single-chain MspA for nanopore sequencing of DNA HG010543 NIEDERWEIS, MICHAEL UNIVERSITY OF ALABAMA AT BIRMINGHAM View publication
Novel sequencing by synthesis platform to greatly reduce the cost of nucleic acid sequencing HG010558 PRATT, MARK ROBIN ULTIMA GENOMICS, INC. View publication
RNA Sequencing Via Single Reverse Transcript Assessments HG011070 GERMAN, SEAN ELECTRONIC BIOSCIENCES, INC. View publication
Conductance Fluctuations: A New Approach to Sequencing? HG010522 LINDSAY, STUART ARIZONA STATE UNIVERSITY-TEMPE CAMPUS View publication
Nanopore Based Direct BAT-25 Microsatellite Sequencing HG010435 SCHIBEL, ANNA ELECTRONIC BIOSCIENCES, INC. View publication
High Accuracy Nanopore Sequencing HG005115 GUNDLACH, JENS UNIVERSITY OF WASHINGTON View publication
IMPROVING THROUGHPUT OF LONG READS WITH HIGH CONSENSUS BASE ACCURACY TO RESOLVE REPETITIVE DNAS HG010548 MIGA, KAREN HAYDEN UNIVERSITY OF CALIFORNIA SANTA CRUZ View publication
LC/MS-Based Direct RNA Sequencing with Concomitant Capability to Sequence Multiple Base Modifications at Single-base Resolution HG011099 ZHANG, SHENGLONG NEW YORK INST OF TECHNOLOGY View publication
DNA Sequencing with novel 2D FET-nanopore devices HG010536 DRNDIC, MARIJA UNIVERSITY OF PENNSYLVANIA View publication
Exonuclease Epigenetic Sequencing HG010049 ERVIN, ERIC ELECTRONIC BIOSCIENCES, INC. View publication
High-accuracy, long-range sequencing for HIV-1 genotyping HG010108 KIM, SANGGU OHIO STATE UNIVERSITY View publication
Direct Determination of Multiple Specific Forms of DNA Chemical Modifications in Human Genome HG011095 FANG, GANG ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI View publication
Computational Design Engine for Accurate and Efficient Sequencing of DNA and RNA HG002776 MUTHUKUMAR, MURUGAPPAN UNIVERSITY OF MASSACHUSETTS AMHERST View publication
Direct nanopore detection of modified RNA to probe structure and dynamics HG010538 TIMP, WINSTON GEORGE JOHNS HOPKINS UNIVERSITY View publication
Exploring 3Dpol for RNA sequencing in real time HG011120 HOU, YA-MING THOMAS JEFFERSON UNIVERSITY View publication
Single-cell direct RNA sequencing using electrical zero-mode waveguides and engineered reverse transcriptases HG011087 WANUNU, MENI NORTHEASTERN UNIVERSITY View publication
Chemically Tuned Silicon Nitride Nanopores for Nucleic Acid Sequencing HG011096 DWYER, JASON RODGER UNIVERSITY OF RHODE ISLAND View publication
Sequencing by Direct Electrical Measurements of Polymerase Fluctuations HG011079 LINDSAY, STUART ARIZONA STATE UNIVERSITY-TEMPE CAMPUS View publication
Novel sequencing by synthesis chemistry to further reduce the cost of nucleic acid sequencing HG011060 MAZUR, DANIEL JOSEPH ULTIMA GENOMICS, INC. View publication
Improving biological nanopores for precision nucleic acid sequencing using a computational microscope HG011741 AKSIMENTIEV, ALEKSEI; CHEN, MIN UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN View publication
A Unified Nanopore Platform for Direct Sequencing of Individual Full Length RNA Strands Bearing Modified Nucleotides HG010053 AKESON, MARK A UNIVERSITY OF CALIFORNIA SANTA CRUZ View publication
Single-Molecule Electronic Nucleic Acid Sequencing-by-Synthesis Using Novel Tagged Nucleotides and Nanopore Constructs HG010514 JU, JINGYUE; CHURCH, GEORGE M; KALACHIKOV, SERGEY COLUMBIA UNIV NEW YORK MORNINGSIDE View publication
Genome Technologies Coordinating Center HG011735 ADAMS, MARK D JACKSON LABORATORY View publication