Project Title |
Project Number |
Contact PI / Project Leader |
Organization Name |
Pulications |
High-throughput analysis of the effects of gene promoters and chromosomal environments on single-cell gene expression |
HG012304-01 |
COHEN, BARAK A |
WASHINGTON UNIVERSITY |
View publication |
A single-strand ligation approach for concomitant DNA and RNA next-generation sequencing from low abundance inputs |
HG011877 |
RAO, VARSHA |
CLARET BIOSCIENCE, LLC |
View publication |
Development of efficient quantitative chromatin profiling in kit and high-throughput formats |
HG010640 |
VENTERS, BRYAN J; KEOGH, MICHAEL-CHRISTOPHER |
EPICYPHER, INC. |
View publication |
A scalable kit-based assay for multi-omic analyses of transcriptional protein binding and chromatin interactions from ultra-low input frozen and FFPE samples at single-cell resolution |
HG011897 |
SCHMITT, ANTHONY |
ARIMA GENOMICS, INC. |
View publication |
Tagmentation-based Indexing for Methylation Sequencing as a novel method of high-throughput methylation clock measurement |
HG011850 |
SINCLAIR, DAVID A |
HARVARD MEDICAL SCHOOL |
View publication |
Bacteriophage Mu as Tool to Study Genome Organization in Bacteria and Eukaryotes |
HG011838 |
HARSHEY, RASIKA M;FREDDOLINO, PETER L |
UNIVERSITY OF TEXAS, AUSTIN |
View publication |
High-throughput detection of transcriptomic and epitranscriptomic variation and kinetics using MarathonRT |
HG011868 |
PYLE, ANNA MARIE; GRAVELEY, BRENTON R |
YALE UNIVERSITY |
View publication |
STAMP technology to enable single-cell and isoform-sensitive detection of RBP sites |
HG011864 |
YEO, EUGENE WEI-MING |
UNIVERSITY OF CALIFORNIA, SAN DIEGO |
View publication |
High-throughput development and characterization of compact tools for transcriptional and chromatin perturbations |
HG011866 |
BINTU, LACRAMIOARA; BASSIK, MICHAEL C |
STANFORD UNIVERSITY |
View publication |
Ion Fountain Nanopore Readers for High-Resolution DNA and RNA Sequencing |
HG011689 |
WANUNU, MENI |
NORTHEASTERN UNIVERSITY |
View publication |
RNA targeting tools with novel specific RNA-guided RNA-targeting CRISPR effectors |
HG011857 |
GOOTENBERG, JONATHAN SAMUEL; ABUDAYYEH, OMAR O |
MASSACHUSETTS INSTITUTE OF TECHNOLOGY |
View publication |
Nanopore based profiling of epigenetic state |
HG009190 |
TIMP, WINSTON GEORGE |
JOHNS HOPKINS UNIVERSITY |
View publication |
Protein tagging at scale to enable functional genomic studies |
HG011855 |
CHAVEZ, ALEJANDRO |
COLUMBIA UNIVERSITY HEALTH SCIENCES |
View publication |
Development of efficient quantitative chromatin profiling in kit and high-throughput formats |
HG010640 |
VENTERS, BRYAN J; KEOGH, MICHAEL-CHRISTOPHER |
PHER, INC. |
View publication |
Arrayed single-cell readout of pooled genetic perturbation libraries |
HG009283 |
BLAINEY, PAUL CLARK |
BROAD INSTITUTE, INC. |
View publication |
Next-generation Functional Genetic Screening of Un-screenable Traits |
HG009285 |
MALI, PRASHANT; TAMAYO, PABLO ; ZHANG, KUN |
UNIVERSITY OF CALIFORNIA, SAN DIEGO |
View publication |
Programmable RNA-targeting tools |
HG009761 |
ZHANG, FENG |
BROAD INSTITUTE, INC. |
View publication |
A transposase system for integrative ChIP-exo and ATAC-seq analysis at single-cell resolution |
HG010211 |
ZEITLINGER, JULIA |
STOWERS INSTITUTE FOR MEDICAL RESEARCH |
View publication |
AVATAR: highly parallel analysis of variation in transcription factors and their DNA binding sites |
HG010200 |
BULYK, MARTHA L |
BRIGHAM AND WOMEN’S HOSPITAL |
View publication |
Massively Parallel Single Cell Detection of Rare Variants with Split-Pool Combinatorial Indexing |
HG011229 |
KENNEDY, SCOTT ROBERT; SEELIG, GEORG |
UNIVERSITY OF WASHINGTON |
View publication |
Versatile, exponentially scalable methods for single cell molecular profiling |
HG010632 |
SHENDURE, JAY ASHOK; TRAPNELL, BRUCE COLSTON |
UNIVERSITY OF WASHINGTON |
View publication |
Circular RNA as a platform for genome-wide microRNA sponge libraries |
HG011214 |
PICKERING, BRIAN FREDERICK |
CHIMERNA THERAPEUTICS INC. |
View publication |
Orthocoding for Spatial Sequencing |
HG011231 |
SALZMAN, JULIA; FORDYCE, POLLY MORRELL; ROHATGI, RAJAT |
STANFORD UNIVERSITY |
View publication |
Drop-BS: high-throughput single-cell bisulfite sequencing on a microfluidic droplet platform |
HG010195 |
LU, CHANG |
VIRGINIA POLYTECHNIC INST AND ST UNIV |
View publication |
Development of methods for multi-omic analysis of DNA methylation and chromatin architecture in single cells |
HG010634 |
ECKER, JOSEPH R; DIXON, JESSE R |
SALK INSTITUTE FOR BIOLOGICAL STUDIES |
View publication |
TempO-Seq Profiling of RNA Epitranscriptomic Modifications |
HG009763 |
SELIGMANN, BRUCE E. |
BIOSPYDER TECHNOLOGIES, INC. |
View publication |
Epi-seq: Multiplexed ChIP-seq for personalized medicine and drug discovery |
HG010237 |
JELINEK, MARY ANNE |
ACTIVE MOTIF, INC. |
View publication |
DNA barcoding via multi-scan and step control in dual-pore tug-of-war |
HG011236 |
REISNER, WALTER; DUNBAR, WILLIAM BRUCE; SLADEK, ROBERT |
MCGILL UNIVERSITY |
View publication |
On-site, high-fidelity target sequencing and absolute quantitation for HIV-1 surveillance |
HG010318 |
KIM, SANGGU |
OHIO STATE UNIVERSITY |
View publication |
Non-destructive epigenetic sequencing with DNA deaminase enzymes |
HG010646 |
KOHLI, RAHUL MANU; WU, HAO |
UNIVERSITY OF PENNSYLVANIA |
View publication |
A single cell spatial genomics platform for multi-modal characterization of tissue organization |
HG010647 |
CHEN, FEI; MACOSKO, EVAN Z |
BROAD INSTITUTE, INC. |
View publication |
Integrative single-cell spatial genomic, transcriptomic, and epigenetic imaging in mammalian tissue |
HG011245 |
WANG, SIYUAN |
YALE UNIVERSITY |
View publication |
Mapping gene-by-environment interactions using multiplexed single cell RNA-sequencing |
HG011239 |
YE, CHUN JIMMIE |
UNIVERSITY OF CALIFORNIA, SAN FRANCISCO |
View publication |
Automated CRISPR Enabled DNA Synthesis (CEDS) |
HG011675-01A1 |
LYNCH, MICHAEL DAVID |
DUKE UNIVERSITY |
View publication |
Synthesis and non-chromatographic purification of long RNA oligonucleotides containing naturally occurring modification |
HG012257-01 |
ROYZEN, MAKSIM |
STATE UNIVERSITY OF NEW YORK AT ALBANY |
View publication |
GenSyn: A Cycle for Serial Assembly of Very Large DNA Molecules |
HG012281-01 |
SCHWARTZ, DAVID C |
UNIVERSITY OF WISCONSIN-MADISON |
View publication |
Development of a Fully Enzymatic Oligonucleotide Synthesis Cycle by Engineered Template Independent Polymerases and a Novel Phosphate dNTP Blocking Group |
HG011679 |
SAMMOND, DEANNE WALLANDER; PAUL, NATASHA |
MOLECULAR ASSEMBLIES, INC. |
View publication |
Enzymatic Synthesis of RNA |
HG011669 |
BENNER, STEVEN A; POMERANTZ, RICHARD T |
FOUNDATION FOR APPLIED MOLECULAR EVOLUTN |
View publication |
A low-cost benchtop oligonucleotide synthesizer using inkjet enzymatic DNA synthesis |
HG011736 |
HORGAN, ADRIAN |
DNA SCRIPT |
View publication |
Single-chain MspA for nanopore sequencing of DNA |
HG010543 |
NIEDERWEIS, MICHAEL |
UNIVERSITY OF ALABAMA AT BIRMINGHAM |
View publication |
Novel sequencing by synthesis platform to greatly reduce the cost of nucleic acid sequencing |
HG010558 |
PRATT, MARK ROBIN |
ULTIMA GENOMICS, INC. |
View publication |
RNA Sequencing Via Single Reverse Transcript Assessments |
HG011070 |
GERMAN, SEAN |
ELECTRONIC BIOSCIENCES, INC. |
View publication |
Conductance Fluctuations: A New Approach to Sequencing? |
HG010522 |
LINDSAY, STUART |
ARIZONA STATE UNIVERSITY-TEMPE CAMPUS |
View publication |
Nanopore Based Direct BAT-25 Microsatellite Sequencing |
HG010435 |
SCHIBEL, ANNA |
ELECTRONIC BIOSCIENCES, INC. |
View publication |
High Accuracy Nanopore Sequencing |
HG005115 |
GUNDLACH, JENS |
UNIVERSITY OF WASHINGTON |
View publication |
IMPROVING THROUGHPUT OF LONG READS WITH HIGH CONSENSUS BASE ACCURACY TO RESOLVE REPETITIVE DNAS |
HG010548 |
MIGA, KAREN HAYDEN |
UNIVERSITY OF CALIFORNIA SANTA CRUZ |
View publication |
LC/MS-Based Direct RNA Sequencing with Concomitant Capability to Sequence Multiple Base Modifications at Single-base Resolution |
HG011099 |
ZHANG, SHENGLONG |
NEW YORK INST OF TECHNOLOGY |
View publication |
DNA Sequencing with novel 2D FET-nanopore devices |
HG010536 |
DRNDIC, MARIJA |
UNIVERSITY OF PENNSYLVANIA |
View publication |
Exonuclease Epigenetic Sequencing |
HG010049 |
ERVIN, ERIC |
ELECTRONIC BIOSCIENCES, INC. |
View publication |
High-accuracy, long-range sequencing for HIV-1 genotyping |
HG010108 |
KIM, SANGGU |
OHIO STATE UNIVERSITY |
View publication |
Direct Determination of Multiple Specific Forms of DNA Chemical Modifications in Human Genome |
HG011095 |
FANG, GANG |
ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI |
View publication |
Computational Design Engine for Accurate and Efficient Sequencing of DNA and RNA |
HG002776 |
MUTHUKUMAR, MURUGAPPAN |
UNIVERSITY OF MASSACHUSETTS AMHERST |
View publication |
Direct nanopore detection of modified RNA to probe structure and dynamics |
HG010538 |
TIMP, WINSTON GEORGE |
JOHNS HOPKINS UNIVERSITY |
View publication |
Exploring 3Dpol for RNA sequencing in real time |
HG011120 |
HOU, YA-MING |
THOMAS JEFFERSON UNIVERSITY |
View publication |
Single-cell direct RNA sequencing using electrical zero-mode waveguides and engineered reverse transcriptases |
HG011087 |
WANUNU, MENI |
NORTHEASTERN UNIVERSITY |
View publication |
Chemically Tuned Silicon Nitride Nanopores for Nucleic Acid Sequencing |
HG011096 |
DWYER, JASON RODGER |
UNIVERSITY OF RHODE ISLAND |
View publication |
Sequencing by Direct Electrical Measurements of Polymerase Fluctuations |
HG011079 |
LINDSAY, STUART |
ARIZONA STATE UNIVERSITY-TEMPE CAMPUS |
View publication |
Novel sequencing by synthesis chemistry to further reduce the cost of nucleic acid sequencing |
HG011060 |
MAZUR, DANIEL JOSEPH |
ULTIMA GENOMICS, INC. |
View publication |
Improving biological nanopores for precision nucleic acid sequencing using a computational microscope |
HG011741 |
AKSIMENTIEV, ALEKSEI; CHEN, MIN |
UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN |
View publication |
A Unified Nanopore Platform for Direct Sequencing of Individual Full Length RNA Strands Bearing Modified Nucleotides |
HG010053 |
AKESON, MARK A |
UNIVERSITY OF CALIFORNIA SANTA CRUZ |
View publication |
Single-Molecule Electronic Nucleic Acid Sequencing-by-Synthesis Using Novel Tagged Nucleotides and Nanopore Constructs |
HG010514 |
JU, JINGYUE; CHURCH, GEORGE M; KALACHIKOV, SERGEY |
COLUMBIA UNIV NEW YORK MORNINGSIDE |
View publication |
Genome Technologies Coordinating Center |
HG011735 |
ADAMS, MARK D |
JACKSON LABORATORY |
View publication |